Problem 1.5.1: Frequency or energy?
Consider some physical quantity $A$. The multiplication of $A$ by any power of arbitrary fundamental constant, certainly changes it's dimensionality, but not the physical meaning. For example, the quantity $e\equiv E/c^2$ is energy, despite it has the dimensionality of mass. Why, then, we call the quantity $E/\hbar$ frequency, but not energy, despite that Planck constant $\hbar$, like speed of light $c$, is fundamental constant?
Let's analyze the methods for measuring of considered quantities to answer this quenstion. $E$ and $E/c^2$ are measured by the same procedure, for example, using a calorimeter, but frequency is measured in a fundamentally different way, for example, using a clock. Consequently, the expression $\omega = E/\hbar$ contains the relation between two different types of measurements, while expression $e = E/c^2$ does not. This metrological difference has mainly historical origin. Recall, that modern chronometers are based on the measurement of difference between energies of atomic levels.